FastQCFastQC Report
Sat 14 Jan 2023
SRR2587089_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2587089_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24840481
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG4142801.6677615864201665No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG4014681.6161844853165284No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA3492501.405971164568029No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA2941601.184196070921493No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA2874361.1571273519220502No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC656430.26425816794771406No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT557590.22446827821087684No Hit
AACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAAT550510.22161809185578976No Hit
AACACAACACAACACAACACAACACAACACAACACAACACAACACAACAC532670.21443626635088103No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG525900.21171087629100258No Hit
TAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACA506070.2037279390845934No Hit
ACAACACAACACAACACAACACAACACAACACAACACAACACAACACAAC480480.19342620619946932No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA456770.18388130245948134No Hit
TAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAA451790.1818765103622591No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA444020.17874855160815928No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA435010.175121407673225No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGAC417680.1681448922023692No Hit
TGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTG404930.1630121413510471No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA398780.16053634388158586No Hit
TTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTG395090.15905086539990912No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT377400.15192942519913363No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA376100.15140608589664586No Hit
TGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGT375520.1511725960539975No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT367570.14797217493493786No Hit
CACAACACAACACAACACAACACAACACAACACAACACAACACAACACAA367470.14793191806551573No Hit
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA301890.12153146309848024No Hit
CAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA290630.11699853960154796No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA283630.1141805587419986No Hit
ACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAG256230.10315017652033388No Hit
AAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGA252520.10165664666477271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)