Read 1: /scratch/yey2sn/DEST_example/fastq/VA_ch_18_m09d20_1.fastq.gz
Read 2: /scratch/yey2sn/DEST_example/fastq/VA_ch_18_m09d20_2.fastq.gz
Sample name: VA_ch_18_m09d20
Output directory: /scratch/yey2sn/DEST_example/pipeline_output
Number of cores used: 10
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5
Maxsnape 0.9
theta:  0.005
D:  0.01
priortype: informative