FastQCFastQC Report
Mon 15 Feb 2021
VA_ch_17_m08d31.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameVA_ch_17_m08d31.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114705443
Sequences flagged as poor quality0
Sequence length75-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16338031.4243465325355136No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG1640870.14305075304926898No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG1355980.11821409381593165No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG1354770.11810860623239997No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGG1264620.11024934536018488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)