FastQCFastQC Report
Mon 15 Feb 2021
VA_ch_16_m09d02_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameVA_ch_16_m09d02_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57073426
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12334002.1610758043506975No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGG801630.1404559102514715No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG688170.12057625557645689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)